质粒名称: | pBLO ddd64.1 |
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出品公司: | 爱迪基因 |
目录编号: | 123121 |
存储实验室: | Jennifer Doudna, Benjamin Oakes |
载体骨架基本信息 |
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载体名称: | -- |
载体出品公司: | -- |
载体抗性: | 氯霉素 |
空载体大小: | 5559 bp |
完整质粒大小: | -- |
载体修饰: | -- |
载体类型: | CRISPR |
筛选标记: | -- |
高拷贝/低拷贝: | 低拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | CasX |
物种来源: | Deltaproteobacteria |
插入大小: | 2955 bp |
基因突变: | Mutated amino acids in catalytic triad to alanine at positions 672, 769, and 935 |
GenBank编号 | -- |
启动子 | -- |
标签/融合蛋白: | -- |
克隆方法: | -- |
5' 克隆位点: | -- |
3' 克隆位点: | -- |
5' 测序引物 | -- |
3' 测序引物 | -- |
文献引用方法 |
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材料和方法部分: | pBLO ddd64.1 was a gift from Jennifer Doudna & Benjamin Oakes (Addgene plasmid # 123121 ; http://n2t.net/addgene:123121 ; RRID:Addgene_123121) |
参考文献部分: | CasX enzymes comprise a distinct family of RNA-guided genome editors. Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brotzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA. Nature. 2019 Feb 4. pii: 10.1038/s41586-019-0908-x. doi: 10.1038/s41586-019-0908-x. 10.1038/s41586-019-0908-x PubMed 30718774 |
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pBLOddd64.1载体基本信息
pBLOddd64.1载体图谱质粒图谱和多克隆位点信息
pBLOddd64.1载体简介
pBLOddd64.1载体序列
LOCUS pBLO ddd64.1 5559 bp ds-DNA circular SYN 27-MAR-2019 DEFINITION E. coli expression vector for catalytically inactivated deltaproteobacteria CasX. ACCESSION . VERSION . KEYWORDS pBLO ddd64.1 SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 5559) AUTHORS Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brotzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA TITLE CasX enzymes comprise a distinct family of RNA-guided genome editors. JOURNAL Nature. 2019 Feb 4. pii: 10.1038/s41586-019-0908-x. doi: 10.1038/s41586-019-0908-x. PUBMED 30718774 REFERENCE 2 (bases 1 to 5559) AUTHORS . TITLE Direct Submission JOURNAL Exported Mar 27, 2019 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..5559 /organism="synthetic DNA construct" /mol_type="other DNA" terminator 2668..2739 /label=rrnB T1 terminator /note="transcription terminator T1 from the E. coli rrnB gene" terminator 2755..2782 /label=T7Te terminator /note="phage T7 early transcription terminator" primer_bind complement(2810..2827) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(2944..3489) /direction=LEFT /label=p15A ori /note="Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin. " primer_bind complement(3024..3043) /label=pBR322ori-F /note="pBR322 origin, forward primer" terminator 3603..3697 /label=lambda t0 terminator /note="transcription terminator from phage lambda" CDS complement(3718..4377) /codon_start=1 /gene="cat" /product="chloramphenicol acetyltransferase" /label=CmR /note="confers resistance to chloramphenicol" /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSS LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA" primer_bind 4292..4311 /label=CAT-R /note="Chloramphenicol resistance gene, reverse primer" promoter complement(4378..4480) /label=cat promoter /note="promoter of the E. coli cat gene encoding chloramphenicol acetyltransferase" CDS complement(4510..5133) /codon_start=1 /gene="tetR from transposon Tn10" /product="tetracycline repressor TetR" /label=TetR /note="TetR binds to the tetracycline operator tetO to inhibit transcription. This inhibition can be relieved by adding tetracycline or doxycycline." /translation="MSRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHV KNKRALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAKSFRCALLSHRDGAKVHLGTR PTEKQYETLENQLAFLCQQGFSLENALYALSAVGHFTLGCVLEDQEHQVAKEERETPTT DSMPPLLRQAIELFDHQGAEPAFLFGLELIICGLEKQLKCESGS" primer_bind 5041..5060 /label=Tet-R /note="Tetracycline resistance gene, reverse primer" promoter 5152..5207 /gene="tetR" /label=tetR/tetA promoters /note="overlapping promoters for bacterial tetR and tetA" protein_bind 5188..5206 /gene="tetO" /label=tet operator /bound_moiety="tetracycline repressor TetR" /note="bacterial operator O2 for the tetR and tetA genes" RBS 5225..5236 /note="strong bacterial ribosome binding site (Elowitz and Leibler, 2000)" ORIGIN 1 cgaccagaac aagctgaagc ccgagatgga cgagaagggc aatctgacca cagccggctt 61 tgcctgctct cagtgtggcc agcctctgtt cgtgtacaag ctggaacagg tgtccgagaa 121 aggcaaggcc tacaccaact acttcggcag atgtaacgtg gccgagcacg agaagctgat 181 tctgctggcc cagctgaaac ctgagaagga ctctgatgag gccgtgacct acagcctggg 241 caagtttgga cagagagccc tggacttcta cagcatccac gtgaccaaag aaagcacaca 301 ccccgtgaag cccctggctc agatcgccgg caatagatac gcctctggac ctgtgggcaa 361 agccctgtcc gatgcctgca tgggaacaat cgccagcttc ctgagcaagt accaggacat 421 catcatcgag caccagaagg tggtcaaggg caaccagaag agactggaaa gcctgaggga 481 gctggccggc aaagagaacc tggaataccc cagcgtgacc ctgcctcctc agcctcacac 541 aaaagaaggc gtggacgcct acaacgaagt gatcgccaga gtgagaatgt gggtcaacct 601 gaacctgtgg cagaagctga aactgtccag ggacgacgcc aagcctctgc tgagactgaa 661 gggcttccct agcttccccg tggtggaaag aagggagaat gaggtggact ggtggaacac 721 catcaacgaa gtcaagaaac tgatcgatgc caagagagac atgggcagag tgttttggag 781 cggagtgacc gccgagaaga gaaacaccat cctggaaggc tacaactacc tgcctaacga 841 gaacgaccac aagaagagag agggcagcct ggaaaaccct aagaagcccg ccaagagaca 901 gttcggcgac ctgctgctgt acctggagaa gaagtatgcc ggcgactggg gcaaagtgtt 961 cgatgaggcc tgggagagaa tcgacaagaa gattgccggc ctgaccagcc acatcgagag 1021 agaggaagcc agaaacgccg aggacgccca gtctaaagcc gtgctgacag attggctgag 1081 agccaaggcc agcttcgtgc tggaaaggct gaaagaaatg gatgagaaag agttctacgc 1141 ctgcgagatc cagctgcaga agtggtacgg ggacctgaga ggcaatccct ttgccgtgga 1201 agccgagaac agagtggtgg acatcagcgg ctttagcatc ggctctgacg gccactccat 1261 ccagtacagg aacctgctgg cctggaagta cctggaaaat ggcaagagag agttctacct 1321 gctgatgaac tacggcaaga agggcagaat cagattcacc gacggcaccg acatcaagaa 1381 aagcggcaag tggcagggcc tgctgtatgg cggcggaaag gccaaagtga tcgacctgac 1441 cttcgatccc gacgacgagc agctgatcat tctgcctctg gccttcggca ccagacaggg 1501 cagagagttc atctggaacg atctgctgtc cctggaaacc ggcctgatca agctggccaa 1561 cggcagggtg atcgagaaaa ccatctacaa caagaaaatc ggcagagatg agcccgcact 1621 gtttgtggcc ctgacctttg agaggagaga agtggtcgat cccagcaaca tcaagcccgt 1681 gaacctgatc ggagtggcca gaggcgagaa tatccctgcc gtgattgccc tgacagaccc 1741 tgagggatgt cccctgcctg agtttaagga tagctctggc ggccctaccg acatcctgag 1801 aatcggcgag ggctacaaag agaagcagag agccatccag gccgccaaag aggtggaaca 1861 gagaagagcc ggcggataca gcagaaagtt cgccagcaag tccagaaacc tggccgatga 1921 catggtcagg aacagcgcca gggacctgtt ctaccacgcc gtgacacatg atgccgtgct 1981 ggtgttcgcg aacctgtcaa gaggcttcgg cagacaggga aaaagaacct tcatgaccga 2041 gagacagtac acgaagatgg aagattggct caccgccaaa ctggcctacg agggcctgac 2101 aagcaagacc tacctgtcca agacactggc ccagtacacc tccaagacct gctccaattg 2161 cggcttcacc atcaccaccg ccgactacga tggaatgctc gtgagactga agaaaacctc 2221 cgacggctgg gccaccacac tgaacaacaa agagctgaaa gccgagggcc agatcaccta 2281 ctacaacaga tacaagaggc agaccgtcga gaaagagctg tccgccgaac tcgacagact 2341 gagcgaggaa tccggcaaca acgacatcag caagtggacc aagggacgca gagatgaggc 2401 cctgttcctg ctgaagaaga ggttcagcca cagacctgtg caagagcagt ttgtgtgcct 2461 ggattgcggc cacgaagtgc acgcagctga acaggccgct ctgaatatcg ccagaagctg 2521 gctgttcctg aacagcaaca gcaccgagtt caagagctac aagagcggca agcagccttt 2581 cgttggagcc tggcaggcct tctacaagag aaggctcaaa gaagtgtgga agcccaacgc 2641 ctgactcgag taaggatctc caggcatcaa ataaaacgaa aggctcagtc gaaagactgg 2701 gcctttcgtt ttatctgttg tttgtcggtg aacgctctct actagagtca cactggctca 2761 ccttcgggtg ggcctttctg cgtttatacc tagggatata ttccgcttcc tcgctcactg 2821 actcgctacg ctcggtcgtt cgactgcggc gagcggaaat ggcttacgaa cggggcggag 2881 atttcctgga agatgccagg aagatactta acagggaagt gagagggccg cggcaaagcc 2941 gtttttccat aggctccgcc cccctgacaa gcatcacgaa atctgacgct caaatcagtg 3001 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggcg gctccctcgt 3061 gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt 3121 gtctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta 3181 tgcacgaacc ccccgttcag tccgaccgct gcgccttatc cggtaactat cgtcttgagt 3241 ccaacccgga aagacatgca aaagcaccac tggcagcagc cactggtaat tgatttagag 3301 gagttagtct tgaagtcatg cgccggttaa ggctaaactg aaaggacaag ttttggtgac 3361 tgcgctcctc caagccagtt acctcggttc aaagagttgg tagctcagag aaccttcgaa 3421 aaaccgccct gcaaggcggt tttttcgttt tcagagcaag agattacgcg cagaccaaaa 3481 cgatctcaag aagatcatct tattaatcag ataaaatatt tctagatttc agtgcaattt 3541 atctcttcaa atgtagcacc tgaagtcagc cccatacgat ataagttgtt actagtgctt 3601 ggattctcac caataaaaaa cgcccggcgg caaccgagcg ttctgaacaa atccagatgg 3661 agttctgagg tcattactgg atctatcaac aggagtccaa gcgagctcga tatcaaatta 3721 cgccccgccc tgccactcat cgcagtactg ttgtaattca ttaagcattc tgccgacatg 3781 gaagccatca caaacggcat gatgaacctg aatcgccagc ggcatcagca ccttgtcgcc 3841 ttgcgtataa tatttgccca tggtgaaaac gggggcgaag aagttgtcca tattggccac 3901 gtttaaatca aaactggtga aactcaccca gggattggct gacacgaaaa acatattctc 3961 aataaaccct ttagggaaat aggccaggtt ttcaccgtaa cacgccacat cttgcgaata 4021 tatgtgtaga aactgccgga aatcgtcgtg gtattcactc cagagcgatg aaaacgtttc 4081 agtttgctca tggaaaacgg tgtaacaagg gtgaacacta tcccatatca ccagctcacc 4141 gtctttcatt gccatacgaa attccggatg agcattcatc aggcgggcaa gaatgtgaat 4201 aaaggccgga taaaacttgt gcttattttt ctttacggtc tttaaaaagg ccgtaatatc 4261 cagctgaacg gtctggttat aggtacattg agcaactgac tgaaatgcct caaaatgttc 4321 tttacgatgc cattgggata tatcaacggt ggtatatcca gtgatttttt tctccatttt 4381 agcttcctta gctcctgaaa atctcgataa ctcaaaaaat acgcccggta gtgatcttat 4441 ttcattatgg tgaaagttgg aacctcttac gtgccgatca acgtttcatt ttcgccagat 4501 atcgacgtct taagacccac tttcacattt aagttgtttt tctaatccgc atatgatcaa 4561 ttcaaggccg aataagaagg ctggctctgc accttggtga tcaaataatt cgatagcttg 4621 tcgtaataat ggcggcatac tatcagtagt aggtgtttcc ctttcttctt tagcgacttg 4681 atgctcttga tcttccaata cgcaacctaa agtaaaatgc cccacagcgc tgagtgcata 4741 taatgcattc tctagtgaaa aaccttgttg gcataaaaag gctaattgat tttcgagagt 4801 ttcatactgt ttttctgtag gccgtgtacc taaatgtact tttgctccat cgcgatgact 4861 tagtaaagca catctaaaac ttttagcgtt attacgtaaa aaatcttgcc agctttcccc 4921 ttctaaaggg caaaagtgag tatggtgcct atctaacatc tcaatggcta aggcgtcgag 4981 caaagcccgc ttatttttta catgccaata caatgtaggc tgctctacac ctagcttctg 5041 ggcgagttta cgggttgtta aaccttcgat tccgacctca ttaagcagct ctaatgcgct 5101 gttaatcact ttacttttat ctaatctaga catcattaat tcctaatttt tgttgacact 5161 ctatcgttga tagagttatt ttaccactcc ctatcagtga tagagaaaag aattcaaaag 5221 atctaaagag gagaaaggat ctatggaaaa gagaatcaac aagatcagga agaagctgag 5281 cgccgacaac gccaccaagc ctgtgtctag gagtggcccc atgaaaaccc tgctcgtcag 5341 agtgatgacc gacgacctga agaagagact ggaaaagagg aggaagaaac ccgaagtgat 5401 gccccaagtg atcagcaaca acgccgccaa caacctgaga atgctgctgg acgactacac 5461 caagatgaag gaagccatcc tgcaggtcta ctggcaagag ttcaaggacg accacgtggg 5521 cctgatgtgc aagtttgccc agcctgccag caagaagat //
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